GAAAACAAAA CGGGAGAGTC AGGCATGGTG GGTACAGCAG CACACACCTG TAAGCTTAGA ACCAGGAAGC AGAGGCAAGA TTTCCAATTC AAGGCCAGCT TGGGGTACAC AGTGAGATCA CAATGAAGTT ACACAGGGAT ACAAAGAAGA GAAGAGACCC ATCGCGGCCC CTGGTGTTAT TATGTGCAGT TGCCCTAAAC W CAGCGTATGA CAGTGACAAG CCTCCAGCTA GTCAAGAGCA CAGCTCCATT CCTTTGCCCA GTTCCTGCCC AACAACCCTG ACTCTGCGCC CAGGGCCCCC TTAGAGCCTC TGTCCCCTCA GAAACCCTGA GGAGAAAGCA CTCTCCTAGG CTCCCCCTCC CCAGCCAGTC CCTGCTCTCC TGCTTGTATA AGGGAGGGTC W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss60940875 | NES16182912 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | A | A | A | T | A | A |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
KK/HlJ |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs48227798 | SNP | T | T | A | A | A | T | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60940875 | NES16182912 | PERLEGEN | MM_PANEL | f | SNP | A/T |
Location: Chr6:124937896 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cops7a | COP9 signalosome subunit 7A | Intron | ||||||
Tssr63233 | transcription start site region 63233 | 1355 bp upstream | ||||||
Tssr63234 | transcription start site region 63234 | 1492 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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