rs48227976 SNP Detail

Summary

• ID
  rs48227976
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56963443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACTTAA TTTCTTTTAT
  TTTTGGTACA GTGTAATTTA TCTTTAAATT TTTATTCATT TATTAGTTAG TTTGTTTTGA
  GACAGGGTTT CTCTGTGTAG CCCTGGCTGT TGTCCTGGAA CTCACTCTGT AGACCAGGCT
  GGCCTCGAAC TCAGAAATCT GCCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCCTAC
  R
  CCACCACTGC CCGGCTTTTA TTTATTTTAT ATATGTGAGT ACACTGTAGC TGTCTTCAGA
  CATACCAGAA AAGGGCCTCA GATCCCATTA CAGATGGTTG TAAACCACCA TGTGGTTGCT
  GAGACTTGAA CTCAGGATTT CTAGAAGAGC AGTCATTGCT CTTAACTGCT GAGCCATCTC
  CCCAGCCTTT TATTTTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136516064	ENSMUSSNP6507374	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48227976					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56963443 () rs orientation: forward

Symbol	Name	Function Class
Gm10658	predicted gene 10658	738 bp downstream
Ptpn9	protein tyrosine phosphatase, non-receptor type 9	within coordinates
Rr195851	regulatory region 195851	within coordinates
Rr212037	regulatory region 212037	42 bp proximal