rs48228277 SNP Detail

Summary

• ID
  rs48228277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTGAA TTATGTCTTA
  TTTAATTTTA CATAAACTCT ATAAACTTAA ACTGGATATT TATAAACACC GAAAGAAAAC
  TGGTCTTATC ATCTATTTCC AGCAAATTGT GCATAATTCT GATTAAGGAA TTTAGCTTAG
  GCTTTTGCAT GTTGTAAGTT TACTTTTGCA ATCGTGGGCA AGGCAGAGTA GGGGCCAACT
  R
  TTGGCCTGGG AACTAGGAAG TGATAGCAAG AGGGAGGAAG AAGCTGGGGT CCCATCATCC
  TTTGCAAGGG CACAAGCCCT CCTGCTAGGC ACTTCTTAAG GTTCCATCAT TTTCCTAAAG
  CACCACACGG AGGCCAAGTC TTTACCAGAT GGTCCTTTGG GGGCAGGGCA CTTACGATGC
  AAACTAGAAC ACTCTGTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135864414	ENSMUSSNP3848025	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320954477	CHEV_3_127182121	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48228277					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272852 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	976 bp downstream
Gm43355	predicted gene 43355	232 bp downstream
Gm54939	predicted gene, 54939	1917 bp upstream