rs48230481 SNP Detail

Summary

• ID
  rs48230481
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:139517836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGACGT ATCTATGTTA
  GTTTTATCAA TATATATAGT TACAGACTTG ACACTTGTCC TTCAGCTACT GTTAGTAAAA
  TAAAAAGTGA AATTCTCAGT GACATTTGTG TCACTTCTCT TGGACATGGG GCTTACTTGC
  CTTACAATTT CTCCTTAATC TCAATATTGA GTGCACGGAA CTCTTTGAGG GGCACATCAC
  W
  CGGCATTGAA AGGAAAAGAA GCTTTTGAGA TGTGCTCATG GTTTGGGGGT CTTTATTTTT
  AAAAATAAAT AAAACATGGA CAAAGAATGA GATTAGGAAA GGCATGGGAG AGCATCCTTT
  GTTGAGCAGG ATTGTAAATC TGAGAGTTGA GGCTATCCTG GCCTATATAG AGAATTTTAG
  GGCAGTCTGG GCTACATAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61086382	NES16598866	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48230481					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61086382	NES16598866	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:139517836 () rs orientation: forward

Symbol	Name	Function Class
Gm43678	predicted gene 43678	36 bp downstream
Rr74613	regulatory region 74613	675 bp proximal