rs48230752 SNP Detail

Summary

• ID
  rs48230752
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:13850422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTTCTGT AAGGCAAAGG
  ACACTGCCAT AGGACAAAAC AGCAACCTAC AGACTCAGCA AAACGTTACC AACACTACAT
  CCAGTGGAGT TTGTTTTAAT AGTCATTTAT TATAATATTT AAGGCTATGT TTTAGTTAGT
  TCCATCTAGT ATTTTATAGG AAATGTCTTT AAAAATTGTA TCATTCTGAA TTATTTTCAA
  W
  TATAGTCATG CCCCATTTTT CTGGATTATT TGAACAATCT TTTAGTAACT TTAGCCTGCC
  AGCCCAAATC AAGAAATTAC TAGGAAAGAG TTCCAAGCTG TGTATCTGTT TTATCGGCAC
  AAAGCTTTAC CTCTAAAATA GTCCTTTCAG AAGCTATTTA CACTACATAG TTATAAAACG
  TGAACATGCA CACAAGAACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61750109	NES17677619	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48230752					SNP	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61750109	NES17677619	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:13850422 () rs orientation: forward

Symbol	Name	Function Class
Lyst	lysosomal trafficking regulator	within coordinates
Rr270836	regulatory region 270836	422 bp distal
Rr275153	regulatory region 275153	822 bp distal
Rr282634	regulatory region 282634	1979 bp proximal