rs48232943 SNP Detail

Summary

• ID
  rs48232943
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58665330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGGAAGCCAT AACAATTCAG GTACCCTGGA ACTTGTAGTT
  ACAGATGGTG GTGAGCTGCC ATGTGGCTTC CGACCTAGCT CTCCAGTCTT TGTAATCCAG
  W
  TCTGAGTGAC CTAATTTATA TACTAATTTA TATGCCTTCG TCTTTCTCTT CTCAAGTCAC
  TTAATAACTA TTGGTTCTAA ACTATTAATT TCTTATTTCT T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146566734	ENSMUSSNP2090625	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48232943					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58665330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	613 bp distal
Pnlip	pancreatic lipase	within coordinates
Tssr157271	transcription start site region 157271	1833 bp downstream
Tssr157272	transcription start site region 157272	1817 bp downstream
Tssr157273	transcription start site region 157273	670 bp downstream
Tssr157274	transcription start site region 157274	667 bp downstream
Tssr157275	transcription start site region 157275	635 bp downstream
Tssr157276	transcription start site region 157276	609 bp downstream
Tssr157277	transcription start site region 157277	376 bp downstream
Tssr157278	transcription start site region 157278	238 bp upstream
Tssr157279	transcription start site region 157279	255 bp upstream
Tssr157280	transcription start site region 157280	271 bp upstream
Tssr159961	transcription start site region 159961	1728 bp upstream