rs48233460 SNP Detail

Summary

• ID
  rs48233460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160941456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tggtttgaa taaaatggcc accacaggcc
  tacaggaagt agcactatta ggaggtgtgg ccttgttgga gtaggtgtga tcttttagag
  aaagtgtctc cactggacat gggttttgaa gtctcatatg cttaaggcag gcccagtgta
  R
  caatgtctct tcctgctgcc tgctgatcca gatattctca gttacctctc cagcaccatg
  tctgtctgtg tgccaccatg cagattaatg gtggacaatt tgcctaggat atgcaatgtt
  caaggtttaa ttccccagca atgcctttct                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145906407	ENSMUSSNP3652562	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320080351	CHEV_1_163044017	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48233460					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160941456 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klhl20	kelch-like 20			Intron
				Noncoding-Transcript-Variant
Rr421756	regulatory region 421756			803 bp proximal