rs48233947 SNP Detail

Summary

• ID
  rs48233947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:144633003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCTCAGTA CAATGCTTGC ATATATTATG ATTTCAGTAA
  GATATACTAA GTGGAAACAT TCTATAAAAA TCCACATTAT AAAGGGACAG TCAGACAGTT
  R
  CTCACTGTGC ATATATCTAC TTATTAAGAG ATTAGTCAAC ATAAGAAAAG TCTGTGCTAG
  ATGCTGGCGT TGGCTAAAAT AATCATAATT GTTAATGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60960438	NES16174379	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	G		A	G		A	A		A
ss133954121	ENSMUSSNP7235902	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
ss322064303	CHEV_6_144635797	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48233947					SNP	A	A	G	A	A	G	G	G	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60960438	NES16174379	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144633003 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr400038	regulatory region 400038			1898 bp upstream
Rr640977	regulatory region 640977			520 bp proximal
Rr640978	regulatory region 640978			1871 bp proximal
Sox5	SRY (sex determining region Y)-box 5			Intron
				Noncoding-Transcript-Variant
Sox5os3	SRY (sex determining region Y)-box 5, opposite strand 3			within coordinates
Tssr64022	transcription start site region 64022			1467 bp upstream