rs48235334 SNP Detail

Summary

• ID
  rs48235334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19191680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAG GGTTGGAAGC CAAGGCTTCC
  Y
  TTAGAAAGAC TGGACGGGTC CCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148476697	ENSMUSSNP3263502	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss322117306	CHEV_7_20043104	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48235334					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19191680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	10 bp proximal
Mark4	MAP/microtubule affinity regulating kinase 4	within coordinates
Rr400149	regulatory region 400149	1001 bp upstream
Rr643146	regulatory region 643146	within coordinates
Rr643147	regulatory region 643147	1056 bp proximal
Tssr64858	transcription start site region 64858	1175 bp upstream
Tssr70918	transcription start site region 70918	917 bp downstream
Tssr70919	transcription start site region 70919	973 bp downstream
Tssr70920	transcription start site region 70920	993 bp downstream
Tssr70921	transcription start site region 70921	1024 bp downstream
Tssr70922	transcription start site region 70922	1046 bp downstream
Tssr70923	transcription start site region 70923	1480 bp downstream