rs48235644 SNP Detail

Summary

• ID
  rs48235644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70732414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AAAGAACTCC TTGGAAATGA
  R
  GGTGTTGGAA GCAGGCTTCT GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60633382	NES16277721	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	A	G	G	G	G	G		A	A	G	A		G
ss145123163	ENSMUSSNP5643226	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss322699462	CHEV_8_72803663	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48235644					SNP	G	A	G	G	A	G	G	G	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60633382	NES16277721	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70732414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20447	CpG island 20447	1246 bp distal
Gm38427	predicted gene, 38427	within coordinates
Rr177423	regulatory region 177423	387 bp proximal
Rr186738	regulatory region 186738	1013 bp distal
Tssr2595	transcription start site region 2595	1678 bp downstream
Tssr77724	transcription start site region 77724	1651 bp downstream