rs48235877 SNP Detail

Summary

• ID
  rs48235877
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAATATTG CAAAAGGAAA
  GGATTCCCAG GTGTGTCTAG CCTGTGGCTC AACAGCCACA TGTGTTCCAG ATCCGAACAT
  GGCAGCATCT AGGCAGACAT GGGCCTGGAG GAGCCAAGAG TACCACATCT TGTTCTGAAG
  GTAGCTAGAA GATTGGATTA CAGGCAGTTA GGATGAAAGT CTTAGAGACC ACATCCACAG
  K
  GACACACTTC CTCCAACAAG GCTACACCTC CTCCAACAAG GGCACACCTC CTACTAGTGC
  CACTCCCTGG ACCAAGCATA TACAAACCAG CCCAGTATCT TAATCATTAT CTATATTGTA
  TACCACAGCT TCTCTCTGAA TTATGTCTTA TTTAATTTTA CATAAACTCT ATAAACTTAA
  ACTGGATATT TATAAACACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135864399	ENSMUSSNP2589460	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48235877					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272521 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1307 bp downstream
Gm43355	predicted gene 43355	563 bp downstream