rs48236281 SNP Detail

Summary

• ID
  rs48236281
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30804871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTTAA TTATTTGTTT
  ACTTAGTTAC TCAGTCTGGC CTCAGACTCC TTATATAGTG GAAACTGGCC TTCATTTTTC
  AAGTGCTAGG AATGCACACC CAGTTTGTGT TTTAGCTGTT AAACACCCTA CTGGAAGCTA
  CAACTCAACT CAAATGCTCC CTTTACTGAA AGATGTGAGC AATTCAACGG GCTGGGATCC
  C
  TAGGGACATT TCTCTCAGGA CTCCAGTTCT CTGGAGATCC TGGAGAAAAG AGATTCCCAC
  GCTGTAACTA TTACCAACTG CCAGTCTCAA CCTCTCAAAA TTGTTTATAA AATGCTCTAA
  GATTGCCTAA GCATCTCTAC ATGACCCCGA GCGCCCATTT TACAAACCGG GAGGCCAAGA
  GGCTGGGAGC GTACGCTGCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148186577	ENSMUSSNP1716724	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48236281					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30804871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	206 bp proximal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	233 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	233 bp distal
Mir5625	microRNA 5625	409 bp upstream
Slc35f6	solute carrier family 35, member F6	406 bp upstream
Tssr45603	transcription start site region 45603	394 bp upstream
Tssr45604	transcription start site region 45604	408 bp upstream
Tssr45605	transcription start site region 45605	478 bp upstream