rs48237425 SNP Detail

Summary

• ID
  rs48237425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87209753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCGCGTC TGAAGCTTTA
  TTCTCTCCTG CCCTGAGAAC CCAGGCCTTG GAAGGAAGTG ACCGCAAGCA GGCTCCTCTA
  AAGGGTCACT TTGAAGACAG GGCTACAGGT CTGGTTTTAA ACCCCAGCTC CATAGGGGAG
  GAAGACGGCC CTGAAGTGGT CACTTTATTG TTGCGCCAGG ACTTCAGTAG ATGCCACTAG
  R
  CCCGTGCTTT TTGCAGGAAG GAAAAGTCAG CAGCCTTGAC TGAGCGACTG GGCGGAGAAG
  CAGGGCTGGC TGGTGCCTCT GTTCTTTGCC GCTGTGGGGG CTCCGAGATG CCCCTTCACA
  TCTATGCATG CTTTATTCCT GCCTGTCAAG CGGCCTCCAG CGGCTCGCTC TTGCCTTGCC
  CTGACTCTTT TTCCTGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60763994	NES16393991	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48237425					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60763994	NES16393991	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87209753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Efhd1	EF hand domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr414772	regulatory region 414772			within coordinates
Rr414773	regulatory region 414773			within coordinates
Rr414774	regulatory region 414774			147 bp proximal
Tssr7837	transcription start site region 7837			269 bp downstream