rs48237727 SNP Detail

Summary

• ID
  rs48237727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78521886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCAAGA GCCAGCTGCA
  CCCCGTGGCA CATTCAGACA CTTCTCACCA TACCCTAGTC CCACTTGCAC AGGATGATGA
  CCACTAACAA TAGGCTGCCC TTAGAACAGG ACACAAGGGA TATCTTCAGA CGTTCAGCAG
  GGTGACCAAG GCCGGGACAG GAAGGGAGGA AAGCAATTTC TGTGCTCCCA AACCCACACT
  Y
  GGTCCAGGTG CCACCTCCCT CCATTTAGCA GACAGTTAAA ACATTCAACG TTTCTCTAGT
  TGCGTTTCGT TCCAAACCAG ACCGTCATTA TCTAAAATAC CTTTTGGAAA TGAGAAAGTT
  TAAGTCCTCA GGGACTGAAT GTGCCTATTT TCCAAGTCTT TGGCAGTTCC CGGCTTTTAT
  GGGGTAGTCA TGGTGAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	WSB/EiJ
ss61426864	NES16809505	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		T	C		T	T
ss136669086	ENSMUSSNP1323493	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T					T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	WSB/EiJ
rs48237727					SNP	T	T	T	T	T	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426864	NES16809505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78521886 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	942 bp upstream
Cpgi22073	CpG island 22073	891 bp proximal
Gm69315	predicted gene, 69315	within coordinates
Rr683597	regulatory region 683597	8 bp distal
Rr683598	regulatory region 683598	679 bp proximal
Rr683599	regulatory region 683599	1040 bp proximal
Tssr86295	transcription start site region 86295	848 bp upstream
Tssr86296	transcription start site region 86296	878 bp upstream
Tssr86297	transcription start site region 86297	897 bp upstream
Tssr86298	transcription start site region 86298	1134 bp upstream
Tssr86299	transcription start site region 86299	1153 bp upstream
Tssr86300	transcription start site region 86300	1200 bp upstream
Tssr86301	transcription start site region 86301	1217 bp upstream
Tssr86302	transcription start site region 86302	1233 bp upstream
Tssr90659	transcription start site region 90659	1041 bp downstream