rs48239302 SNP Detail

Summary

• ID
  rs48239302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148894206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT CCTGCCTCTA CCTCCTAAGG
  R
  CTGGAATTAC AGTTGTGTGC ACCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144698504	ENSMUSSNP3598169	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321719759	CHEV_5_149768972	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48239302					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148894206 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Cpgi17084	CpG island 17084	1751 bp proximal
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	within coordinates
Rr111639	regulatory region 111639	995 bp proximal
Rr124806	regulatory region 124806	1194 bp proximal
Rr378799	regulatory region 378799	within coordinates
Rr378800	regulatory region 378800	1991 bp upstream
Tssr49867	transcription start site region 49867	1867 bp upstream
Tssr49868	transcription start site region 49868	1923 bp upstream
Tssr54595	transcription start site region 54595	1634 bp upstream
Tssr54596	transcription start site region 54596	1884 bp downstream