rs48239428 SNP Detail

Summary

• ID
  rs48239428
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156959682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGTTGGA GAAGTGGCTT AGAGGTTAAG AAAACCTGCT
  ATCCACGCCG AGGACCTGGG TTTGGGCTCC AGCACCAGCA TGGTGACTCA CACCATCCGT
  K
  AGTGCAGATC CAGGGTATCC AATGGCTTAT TCTCACCTCT GTACCAGGCA CGAAAGTGAT
  CACACACATG TGCATTCAGG CAACACTTAT AGAAAATAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss148092370	ENSMUSSNP6965243	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320584285	CHEV_2_156943498	CHEVERUD	SCREENING_POP	f	SNP		G		T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs48239428					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156959682 () rs orientation: forward

Symbol	Name	Function Class
Rr568436	regulatory region 568436	478 bp distal
Rr568437	regulatory region 568437	614 bp distal
Rr568438	regulatory region 568438	213 bp distal
Rr568439	regulatory region 568439	1269 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27144	transcription start site region 27144	1830 bp downstream