rs48240278 SNP Detail

Summary

• ID
  rs48240278
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:63406284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGCCTAC CCAGCATGAC CTCCTCTCAT AGCCTTCTCA
  GGCTTGCCAC CTATCCCAGA GATTGGCCTA GCCATGCTCT GCATGGTCTC GCCCTCACTG
  R
  CTGCCCCCAG GTAGTGTCGT CCAGGTTATT GTCCATGGCA TTCCTTCACT AGTGCCATCC
  CACAAGACCC CACATCCTCA CTGGAAGCCA TTTCCAGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144828434	ENSMUSSNP4828418	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48240278					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63406284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19187	CpG island 19187	1021 bp distal
Cpgi19188	CpG island 19188	712 bp proximal
Otud7a	OTU domain containing 7A	within coordinates
Rr157438	regulatory region 157438	484 bp distal
Rr167925	regulatory region 167925	683 bp distal