rs48240857 SNP Detail

Summary

• ID
  rs48240857
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16349346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGG GTTGGGGGGA CAGACGTAAC
  K
  TGGGGTGGCG AGGCGGGGCT GTGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148390856	ENSMUSSNP5165621	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48240857					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16349346 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	33 bp upstream
Cpgi18383	CpG island 18383	within coordinates
Gm29443	predicted gene 29443	within coordinates
Gm44589	predicted gene 44589	930 bp upstream
Rr400125	regulatory region 400125	within coordinates
Rr642706	regulatory region 642706	1587 bp distal
Rr642707	regulatory region 642707	439 bp distal
Rr642708	regulatory region 642708	within coordinates
Rr642709	regulatory region 642709	312 bp distal
Rr642710	regulatory region 642710	1715 bp proximal
Rr642711	regulatory region 642711	1823 bp proximal
Tssr64615	transcription start site region 64615	186 bp upstream
Tssr70753	transcription start site region 70753	815 bp upstream
Tssr70754	transcription start site region 70754	798 bp upstream
Tssr70755	transcription start site region 70755	710 bp upstream
Tssr70756	transcription start site region 70756	633 bp upstream
Tssr70757	transcription start site region 70757	616 bp upstream
Tssr70758	transcription start site region 70758	561 bp upstream
Tssr70759	transcription start site region 70759	530 bp upstream
Tssr70760	transcription start site region 70760	400 bp upstream
Tssr70761	transcription start site region 70761	354 bp upstream
Tssr70762	transcription start site region 70762	283 bp upstream
Tssr70763	transcription start site region 70763	145 bp upstream