rs48241900 SNP Detail

Summary

• ID
  rs48241900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:30913560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA GTCAAAGTTT CTTGCAGAGA
  R
  CCGGTTAAAT ACACTTCAAG TTTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148848293	ENSMUSSNP2093082	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss319676653	CHEV_1_30931324	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48241900					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:30913560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi99	CpG island 99	207 bp distal
Gm7256	predicted gene 7256	1004 bp downstream
Gm70275	predicted gene, 70275	453 bp upstream
Phf3	PHD finger protein 3	571 bp upstream
Rr371054	regulatory region 371054	within coordinates
Rr408756	regulatory region 408756	909 bp distal
Rr408757	regulatory region 408757	408 bp distal
Rr408758	regulatory region 408758	30 bp proximal
Rr408759	regulatory region 408759	531 bp proximal
Tssr6135	transcription start site region 6135	466 bp downstream
Tssr6136	transcription start site region 6136	529 bp upstream
Tssr11167	transcription start site region 11167	822 bp upstream
Tssr11168	transcription start site region 11168	554 bp upstream
Tssr11169	transcription start site region 11169	1432 bp downstream