rs48241981 SNP Detail

Summary

• ID
  rs48241981
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27252613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACAGTAC CTGCACGTCA
  GAGTCTTCTA CTCCAGAACC TAGCCCCGCC TTCCCGCCCA CCTGTGCGCA GGCGCAGTCG
  CGCTAGACTG CGGGCAGGGT GGGGGCTAGA CTTGATCCTT TCTGATTGGC GGCGTTCTTC
  GCGACCGAGG CTCTGTGTTG TCATGTGATG GTCGCCGCCC CACACTCTCT TGCTGGTTGG
  M
  GGCTAGGAGG GCTAGAGCGG CTGGTGGAAG GTGCAGTCTG GCTTCCGGTA TCAAGGGCAG
  GACTTCCGGG GCGGGCGGCC CAGGCCGAGG GAGGAGTGTC TGACAGTTGG CGCGACCCGG
  AGGGCGGGCG GGCGCCTCGT GGGGGTGCGG GCCCCAGAGT GCCAGGTGAG GTGCGGGACT
  GGGACGGAGG AGGTTAGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss60985710	NES16135702	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs48241981					SNP	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60985710	NES16135702	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27252613 () rs orientation: forward

Symbol	Name	Function Class
2310022A10Rik	RIKEN cDNA 2310022A10 gene	45 bp upstream
Cpgi18668	CpG island 18668	within coordinates
Pld3	phospholipase D family member 3	within coordinates
Rr167329	regulatory region 167329	within coordinates
Tssr65296	transcription start site region 65296	56 bp upstream
Tssr71425	transcription start site region 71425	118 bp upstream
Tssr71426	transcription start site region 71426	73 bp upstream
Tssr71427	transcription start site region 71427	within coordinates