rs48242358 SNP Detail

Summary

• ID
  rs48242358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32877733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCATGGA GGTAGGGTTT
  GACTGCTGCC TGACTGCAGC TAGACAGAAA TTCAAGAGTC TCCCAGTTCT GCACCAAGAA
  ATCCTACAGG CCTTCCACCC ATACAAACTT GCATAGAAGC TCTAGAGAAA TTTAGGGATA
  TGCCTGGCCT TGGTCTCCTG GAACCTGAAG TCCCAAGTTA ATGATTTTTA AAAACACAAT
  R
  TATCTTGTCT TTGGAAGGGC AGGAGGGGCA ATAAAGGTGG GGTTCAATGT CGCCTTTGGC
  CATACCAGTC TTATCTCCTC CCTCATGTGG GAGGAGTTAA GTCCTGAGGA TCTCTTTTCC
  ATGCTCAGTG TGACCCTGAC TTGGTTTCAC TGTGCAGCTG GCTTACTAAA CCTCCTTTCT
  TGGCCTCATG CCCAGGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62679608	NES17313150	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48242358					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679608	NES17313150	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32877733 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	141 bp upstream
Gm65897	predicted gene, 65897	78 bp upstream
Rr525786	regulatory region 525786	89 bp distal
Rr525787	regulatory region 525787	within coordinates
Rr525788	regulatory region 525788	152 bp proximal
Tssr143725	transcription start site region 143725	119 bp upstream
Tssr143726	transcription start site region 143726	207 bp upstream
Tssr143727	transcription start site region 143727	230 bp upstream
Tssr143728	transcription start site region 143728	250 bp upstream
Tssr143729	transcription start site region 143729	262 bp upstream
Tssr143730	transcription start site region 143730	285 bp upstream
Tssr143731	transcription start site region 143731	307 bp upstream
Tssr143732	transcription start site region 143732	321 bp upstream