rs48242553 SNP Detail

Summary

• ID
  rs48242553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57411442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAC TATTACTGGC TGAGCCATCT
  Y
  AGCAGATCTA ACCAGATCAG AACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145810060	ENSMUSSNP2823460	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325427555	CHEV_17_57243865	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48242553					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57411442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9396	CpG island 9396	750 bp proximal
Gm11110	predicted gene 11110	within coordinates
Rr529280	regulatory region 529280	393 bp proximal
Rr529281	regulatory region 529281	1081 bp proximal
Tnfsf9	tumor necrosis factor (ligand) superfamily, member 9	883 bp upstream
Tssr145375	transcription start site region 145375	959 bp upstream
Tssr148901	transcription start site region 148901	1474 bp downstream