rs48242936 SNP Detail

Summary

• ID
  rs48242936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101938872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCATCCTG TCTTAGTCTA
  GTAAAACAGA GATTGTGTGA GTAAGACCCT GAGTTGGAGG CAAAGGTGGG GACTGCCAGT
  CTTAGGAGCT GGTGCTCATG TGGGCCTTCT GGAAGAAGCT TAAGGTAAGA TCTGTGGAAG
  GAAAAAGCAG CTACAACGAG GAGAGGATAT CACCAGCGAG TGGCAGGTTC AGGCTGTCAA
  R
  GAGTGGCATT CCCAACCAGC TGGAGCAGAA GCCCAGTCTT AGGCTTGCCA AGGGTTTCCT
  CTGCTCTCTT CTGCCTTTAC ACTCAACATC ACCTTCTAGA AAAGGCCATC AGTAATGAAA
  GGCTGGGCTG AACTGACTTT AAGTGTCACC TGCCACCCCC CTTTATTTCT GCCTTCTTTA
  GGAAGTCCAA GGTCTGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52582792	NES15651174	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48242936					SNP	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52582792	NES15651174	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101938872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7794	CpG island 7794	1965 bp distal
D15Mit40	DNA segment, Chr 15, Massachusetts Institute of Technology 40	996 bp distal
Krt18	keratin 18	within coordinates
Rr311450	regulatory region 311450	271 bp distal
Tssr133315	transcription start site region 133315	544 bp downstream