rs48243618 SNP Detail

Summary

• ID
  rs48243618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:29223806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCTGGAA AGCTCATTCC
  TGTGGAACAT TTGCCCGGCA TGTGAGCAAG AAGCAGCAAT ATGCTGGTGA TGATAATAGA
  ACTGGTGGGC TAATCATTCT GGAATGTCTA GGTGTATCTG ACTATGTGCT GAAAACGCAT
  GCATAAAACA TGATACCATG AATGAGTTTG TAGTTAGCTG AGAATAATCC AAAAGAGGGT
  Y
  TACCTCTGTA GCAAGACCTC CAAAAGCTAT TTTTGATGTA CCCATGGTCT TCTACCTCTC
  CTGGGACCCA TACACTCAGC TTGCTGAGAG AAAGGTCATA TTTTCTCCAT GTACCTCTAT
  CTTACAAGGA GCCTCCTACA GAACCACACT ACTACGGTGG GTGCCTAATA AAATGTTAAA
  TATTAAAAGG CAAAAGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62195770	NES17191605	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48243618					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62195770	NES17191605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:29223806 () rs orientation: forward

Symbol	Name	Function Class
Cacna2d3	calcium channel, voltage-dependent, alpha2/delta subunit 3	within coordinates
Tssr127822	transcription start site region 127822	808 bp upstream