rs48244435 SNP Detail

Summary

• ID
  rs48244435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111861217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGAAAT GAGGATAACA
  ATAAGTGCCT ACTACTGCAC TAGATTTTTG TTGAGATAAG TTTTTTTTTC TTAACTACTG
  CAAAGTACTC ACAATGTCTG GCATGTAACG AATGCTTTAA TATATAATCT ATCACTTTTA
  TTATCTAATA TACCGGTACC ATTTAAGAAA CAAAAATACC CTAAGTTTAT CTCTTCAAAT
  Y
  TCCAATTGTC AGTTATAGAC CTCTTTTTAG TCTATCTCAT TAGCTTCTGT AAAGGAATTT
  TAATCCAGCA ACATGACTGC TCTGATCACA TCCAAAGCCT TCTAGGTCTG TATGATTTGG
  CTGAAATGCA GACACATCAG TACCACACAA ATTTAATCCC CCTGGTTGTA ATCCTTTAAC
  ACACACTGTT GATCCCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134277788	ENSMUSSNP1546029	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss325913365	CHEV_X_110065129	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48244435					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111861217 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	1217 bp distal
Rr6449	regulatory region 6449	1465 bp distal