rs48245394 SNP Detail

Summary

• ID
  rs48245394
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20059096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGTAAT GGAGTTATAA
  TGTGTGAGCC TGACAATCCG AGAGATGGAT CCCTGGAATC CATGGCAGAA GGGGAAGAGG
  AGTGACTTTC TAAAGTTGTC TTCTGATCTG CTCGCCCCTC CTCTCGCCCC CCTCTCCACA
  CTAATATATA TTAAATATTT TAAAACATCG CAACAGCAAG AATAAGATCG TGGAGGAAAC
  Y
  GAATGTGTAT GCATTCATTG TATACTAAGA ATTAGGAAGA TCCATCTGTT TGGGAGGGGA
  GGCGTGAGGG TGTTAAGGCA GAATTTGTTA TTTTTATTTC TAATTCCCCC ATTATGAGCA
  TTCATTACTC TTCTATGTAG AAAGAAGAGG CAAGAAGTCC TCAGTTGTCC AAAGCTGTTA
  AGGGTGCAAA GGACCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	NZW/LacJ	PWD/PhJ
ss52600695	NES15697966	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	NZW/LacJ	PWD/PhJ
rs48245394					SNP	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52600695	NES15697966	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20059096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8068	CpG island 8068	207 bp proximal
Gm49566	predicted gene, 49566	311 bp upstream
Map6d1	MAP6 domain containing 1	within coordinates
Rr512839	regulatory region 512839	103 bp proximal
Rr512840	regulatory region 512840	1002 bp proximal
Tssr140349	transcription start site region 140349	918 bp downstream
Tssr140350	transcription start site region 140350	931 bp downstream
Tssr140351	transcription start site region 140351	958 bp downstream