rs48245537 SNP Detail

Summary

• ID
  rs48245537
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3775780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTG TCTGCACATG AATGGATAAG
  S
  AAACGGTGCT CTGCCCATAC AGTAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147722447	ENSMUSSNP5972603	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325088377	CHEV_16_3957916	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48245537					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3775780 () rs orientation: forward

Symbol	Name	Function Class
Nlrc3	NLR family, CARD domain containing 3	within coordinates
Rr326802	regulatory region 326802	1221 bp proximal
Tssr139740	transcription start site region 139740	1540 bp downstream
Tssr139741	transcription start site region 139741	1560 bp downstream