rs48245599 SNP Detail

Summary

• ID
  rs48245599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34261554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAGAAT ACACAGGCCC
  TTTACCTACA ACCCTCCCTG TTCCTCTTGA AAGTTACTAA ACAGCCTTGG GATCGGGGAC
  AGCTGAAGGA TGTTCCCTCT AACCCAAGCA GCAGTAGGAC AAGTAGAACC ATGTCAGTTA
  TTAACTCTAC ATGTGGGTCA AGGGGGCTTT AGAGACAGCA CAAACTCAAG TGAGATCATG
  R
  CACATGTTCT GTTGCTTGTG TGCAGTCTTT TAAGTCACAG ACACCTCTGA CTGTAGCTTT
  CTCGTGGGCA AATTAATGTC TGGGATGGAT ATAATTGGTT GCCTTGACTA TATCTGCAAT
  TAACTAAAAC CCAATTGGCT GGGTACACCT ATGAGGGACT TTTTTTTTCT TAATTAAATA
  ATTTGAAGTG AGAAAACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61134522	NES16640560	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48245599					SNP	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61134522	NES16640560	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34261554 () rs orientation: forward

Symbol	Name	Function Class
Poln	DNA polymerase N	within coordinates
Tssr50627	transcription start site region 50627	1571 bp downstream
Tssr50628	transcription start site region 50628	1594 bp downstream