rs48246706 SNP Detail

Summary

• ID
  rs48246706
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70760451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTC CAGGGGCAGC TCTCCACCCC
  M
  CACCCAACCT TGCTCCCACC CCACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146735540	ENSMUSSNP3901089	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320334017	CHEV_2_70768164	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48246706					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70760451 () rs orientation: forward

Symbol	Name	Function Class
Gm39843	predicted gene, 39843	within coordinates
Rr64262	regulatory region 64262	within coordinates
Rr367203	regulatory region 367203	624 bp upstream
Rr367204	regulatory region 367204	836 bp upstream
Tssr18236	transcription start site region 18236	1025 bp upstream