rs48246820 SNP Detail

Summary

• ID
  rs48246820
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:97550735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTG AAAATTCAAC TGTGTGGAAG
  A
  CGACGCTGAG CCATGGCTTA GCAGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145035155	ENSMUSSNP3257549	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324496752	CHEV_13_98184182	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48246820					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:97550735 () rs orientation: forward

Symbol	Name	Function Class
Rr274314	regulatory region 274314	1666 bp proximal
Rr280761	regulatory region 280761	1644 bp distal
Rr285518	regulatory region 285518	1139 bp proximal