rs48247059 SNP Detail

Summary

• ID
  rs48247059
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3692032 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GGAAAGTGGA ATCACAGGGG
  AAGGACAGGC GCAGACAAAT TTTATCAAAG AAAGGCAGAT TTGGGCACCA GTTTGACTAC
  CAAACAGCTG TTCCCGTTCT CTCTCTGTTT TATCCCTTTG CAAAAGGCTT TGGGGGGAAT
  CTGTCATGCA AGGGAAATGG AAGGAAGGTC ACACAAGGAT TACTGGTGGG GTCCCACTTG
  G
  GGAGGAAGCC AGGGAGGTCA GTGAACTCTG GAAAAGAAAG TTTCTTCCTG GTCGGTTTTA
  ACGGCTTAGA CGGGGTGCAA TTCCAAGAGA CAAAAAGCTA AGTCAGGAAT CAGGAAGCCA
  GACTCAAAGA TGTTAAAGGG TCAAACACTA GCCCATCACT TTTGTATAGA AGTGTTAACT
  ACTGTAGAAT AAATAAATAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323242334	CHEV_10_6604509	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48247059					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3692032 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1270	CpG island 1270	966 bp distal
Gm30164	predicted gene, 30164	within coordinates
Plekhg1	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	within coordinates
Rr219192	regulatory region 219192	1769 bp proximal
Rr224667	regulatory region 224667	within coordinates
Tssr92214	transcription start site region 92214	1761 bp downstream
Tssr92215	transcription start site region 92215	1602 bp downstream
Tssr92216	transcription start site region 92216	1546 bp downstream
Tssr92217	transcription start site region 92217	1361 bp downstream