rs48248582 SNP Detail

Summary

• ID
  rs48248582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95726391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGTCAGTATG GCTCGGGGGT GGTGTTTAAA CCGGGAGTCG
  GGAGACGACT ACGGAGGAGA CAGAACCTGC GACGGCGCCG ACAACTAAGG CTTTTAGCCT
  Y
  TACGCTCCTC AACTCTTAAG GCCCTTCCCT CATCCCGTTG GCCAAATTCC GGTGAGCCCA
  GGGCGGCCTT GGTACCGAAG ACGAAACGCT ACTCCGCCGT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135513053	ENSMUSSNP684078	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48248582					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95726391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13521	CpG island 13521	within coordinates
Gm29948	predicted gene, 29948	within coordinates
Rprd2	regulation of nuclear pre-mRNA domain containing 2	mRNA-UTR
Rr375410	regulatory region 375410	within coordinates
Rr581038	regulatory region 581038	249 bp distal
Rr581039	regulatory region 581039	within coordinates
Rr581040	regulatory region 581040	470 bp proximal
Tssr30646	transcription start site region 30646	240 bp upstream
Tssr34543	transcription start site region 34543	278 bp upstream
Tssr34544	transcription start site region 34544	202 bp upstream
Tssr34545	transcription start site region 34545	172 bp upstream
Tssr34546	transcription start site region 34546	89 bp upstream
Tssr34547	transcription start site region 34547	4 bp upstream
Tssr34548	transcription start site region 34548	132 bp downstream
Tssr34549	transcription start site region 34549	267 bp downstream