rs48249308 SNP Detail

Summary

• ID
  rs48249308
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31183288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCTCCT GAGTGGATTA
  CAGGAATATG CCACCGTGAT TGGCCAAAAC TTTGACCATG ACTATGGCCA CTTTCCCCAG
  CCTTCCTCTT TCCTTCCCTG CTCAGAACCT TCCCTTCTCC CAGGTGGCTC TGCTGCTTTG
  TGTCCTTGAG GTTACTTGTT TTGTGCTGGG GATCCTCAGA GCATCACGTA TGCTAGGCAG
  K
  CCTTCTCGTG CTAGTTTTGT AATACTTTTA AAAAAGAATC CTTTATAAAT AGCATACGTA
  GCTCCTTCCT TCTCTCCTTA ATTCTCCTTC TGTCCCTCCT TTCTCTCTCT GCCTCTCTCT
  CTCTCCTTTT CTCCCTCCAG CTCTTGTCTC ACCAGGGCCT TGCCTGGTAG CTGACCTGAA
  ACTCTCATTC CTCCTGCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61369397	NES16744326	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T		G
ss322889688	CHEV_9_31079577	CHEVERUD	SCREENING_POP	f	SNP											G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48249308					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61369397	NES16744326	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31183288 () rs orientation: forward

Symbol	Name	Function Class
Gm51733	predicted gene, 51733	987 bp upstream
Gm69959	predicted gene, 69959	within coordinates
Rr194404	regulatory region 194404	1288 bp distal
Rr208622	regulatory region 208622	within coordinates