rs48249389 SNP Detail

Summary

• ID
  rs48249389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56284987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAATGA AGTCCAGAAA
  ATGGAGGGGA AATGGCTGGA CTTCTTGTCA CTGTAGCAAA TTAAAGGAAC AATTTAAAAG
  AGAAATGTTT TTATTTTTGA CTAAGTTTCA GGTTTTAACC CATAGTCCAT GGCTCTAATG
  ACTAGGCCAT ATTGGAGAGC AGAGCATCAA AATGGCAGAG TGACAGAGGC TACTCACCTC
  R
  TGGCAAACAG GAAGCTAAGG GAGGGAGTCA GGACAATATA TACTCCAGTG ATGGACCCTC
  TGTAACCTAA CTCCTCCCAC TAGGGCTCGC ATCCTAAAGT TTCCAAGATG TCCTCAAGTA
  GTGTAACCAG CTAAAGACCA TGTCTTCAGT GAACTTGAGG TAAAGGTGGG CATTTCATTT
  TCGAGCCATG ATATCTGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149040883	ENSMUSSNP2246772	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48249389					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56284987 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5695	CpG island 5695	1129 bp distal
Macroh2a1	macroH2A.1 histone	1548 bp upstream
Rr480642	regulatory region 480642	1655 bp distal
Rr480643	regulatory region 480643	1053 bp distal
Tssr122739	transcription start site region 122739	1758 bp upstream
Tssr122740	transcription start site region 122740	1736 bp upstream
Tssr122741	transcription start site region 122741	1666 bp upstream
Tssr122742	transcription start site region 122742	1636 bp upstream
Tssr122743	transcription start site region 122743	1519 bp upstream
Tssr122744	transcription start site region 122744	1506 bp upstream
Tssr122745	transcription start site region 122745	1486 bp upstream
Tssr122746	transcription start site region 122746	1364 bp upstream
Tssr122747	transcription start site region 122747	1326 bp upstream
Tssr122748	transcription start site region 122748	1259 bp upstream
Tssr122749	transcription start site region 122749	1218 bp upstream
Tssr122750	transcription start site region 122750	1087 bp upstream
Tssr122751	transcription start site region 122751	2 bp downstream
Tssr122752	transcription start site region 122752	1424 bp downstream