rs48250315 SNP Detail

Summary

• ID
  rs48250315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28853165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG AAGGGGTTGA CCATGTGAGA
  R
  CTAGAGCCTG GCCGACAATC ACGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60987115	NES16140798	PERLEGEN	MM_PANEL2	f	SNP		A	A			A	G	G
ss148642688	ENSMUSSNP4884961	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss322127373	CHEV_7_29938759	CHEVERUD	SCREENING_POP	f	SNP					G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs48250315					SNP	G	?	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987115	NES16140798	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28853165 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	1940 bp upstream
Cpgi18740	CpG island 18740	1559 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Rasgrp4	RAS guanyl releasing protein 4	within coordinates
Rr644490	regulatory region 644490	467 bp proximal
Rr644491	regulatory region 644491	1450 bp proximal
Rr644492	regulatory region 644492	1962 bp proximal
Tssr65599	transcription start site region 65599	1903 bp upstream
Tssr65600	transcription start site region 65600	1931 bp upstream
Tssr71610	transcription start site region 71610	1857 bp downstream
Tssr71611	transcription start site region 71611	1882 bp downstream
Tssr71612	transcription start site region 71612	1977 bp downstream