rs48251453 SNP Detail

Summary

• ID
  rs48251453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51632925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAAGTGA TCTGCAAAGC
  TCTTCCAGAT TTTAAAAGTA TGTATTTATA GGATAAAAGA AATGATTGCT CAATATATAA
  GCACAAAAAT TATGGTATAT CCATAGAAAT GGATTAATCA TCTCTCAGCA ATAGATATAA
  AAAAAGAATG AACCTTAGCT ACACACAACA ATGCGGATGA ATCTATAAAT ATTTGTGCTG
  R
  GTGAAATAAA CCAGACAAGA AAAAAAAAAA AAGGAGAAAA AAAGCTTTCA TTTACATAAA
  ACCCTAGAAG GAGGACCCTA GCAAAGATAA AGAGATTTTT CCCCCTGGGG CATTGTGAAA
  CTTTCAGGAC GAGAGATGTG ATTGAGCTGA TAATTTCCCT GAGTAAATGC ATACGTCAAA
  CCTTATGACA CTCTACACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149111919	ENSMUSSNP5448636	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48251453					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51632925 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	232 bp upstream
Rr410724	regulatory region 410724	40 bp proximal
Tssr6634	transcription start site region 6634	227 bp upstream
Tssr6635	transcription start site region 6635	404 bp upstream
Tssr6636	transcription start site region 6636	482 bp upstream