rs48251589 SNP Detail

Summary

• ID
  rs48251589
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40507532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGTGAT TAGTGCTGGT
  GAGCACGGCA GGCAAACCTA GGCTGATTCT GTTTTGGTAG CAATTGCCCG TAGAGAGACC
  TCGAAGTTCG CACTGTTATT TATGGAATGA GAGCTTAAAA GGTTGCTGGG CTGGGTCCTG
  GGGACCCTTT TTCGGAAGGA AGTTTTACTC TGAGAGGCTG CCTGATGTAA GGAAAGAACT
  K
  TAGGGTCAGA TTTCATCCGG GGAGAATAAT GCCCTAAGCA AGGTGGTCCA TTTGCGTTTT
  CCTCCTTAGG CCATGGACAC AGTGTGTATT GCGGTCGTTG GAGCTGGCGT GATAGGGCTG
  TCTACTGCAG CATGCATTTC CCAACTGGTT CCCGGATGCA CCGTCACTGT CATCTCAGAC
  AGGTTCACTC CTGATACCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273378	NES16894442	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48251589					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273378	NES16894442	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40507532 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Rr214674	regulatory region 214674	1932 bp distal
Rr224698	regulatory region 224698	within coordinates
Tssr93026	transcription start site region 93026	1483 bp downstream
Tssr93027	transcription start site region 93027	1473 bp downstream