rs48251763 SNP Detail

Summary

• ID
  rs48251763
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8685676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAACCC TAAAATTGTA
  AAAAAGAAAA AAAAAAGAAA GAAAACACGA GAACACTAAA AAGACCCTAA AAAATTCTAA
  AACCCTAAAA AAGAAAAAAA AATCCTGAAA CTCTACAACA ACCCTAGAAC ACTAAAAAGA
  CCATAAAAAA CATAAAAAAA AAAAAAGGTG TCTGGCTGAC CCTAACACCC TGTTTTCCAA
  Y
  AGGCATTGGA GGACCTGTGA AAAGCAATGA ACCCTGCTGG TCTGTTCACT TTCCTACCAC
  TGCAAACTTT GAGTGTTGTC TGTGTCTCTG TATGGGACGT GCACACAGTG GGTCCACGTC
  AGTTGTGATC CGGGTGGCGC TCAGGTTACC AATCAGTAAT CAATGCAACT CCAGTTCCTT
  GCTGTTCACA AAAGTCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61347606	NES16951276	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48251763					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61347606	NES16951276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8685676 () rs orientation: forward

Symbol	Name	Function Class
Gm56531	predicted gene, 56531	within coordinates
Tssr112727	transcription start site region 112727	1588 bp upstream
Tssr115717	transcription start site region 115717	1350 bp downstream