rs48252295 SNP Detail

Summary

• ID
  rs48252295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90825430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCCCTC AGGTGCTGTG
  TAGCCAATGC CCTTGCCAGG CCCATCTCTG CCTGGCTTTG CTGAAAGGAC TGGGCTGCAT
  ACAGCCAGTT ATATAAGTGG TTGCCTTAGA AGAACTGCTG CCCTGAGTCA CGTGGAGCTG
  GCAAACTAGT TCAAGGTAAT TTATGACTTT GGGATGCTTC AGTTTCTAAA TACAACAGAC
  R
  GCTACAAACT GCAAACACTT TAAATTTCTG GCCCAAGGGG GATGTCACAG TCCAACCTGG
  GCTGTACTGG GACCTGGCTA ACAGGGAAGG TTTGTGGAGC TAGTCTGGCT TACCTAGCCC
  CAGGCCAATA GAAGGCTACT CTTGAGCCTG AATAAAGACT CCACCATTCC TCCAGGAGCT
  TCCTGTGGCA CATGCTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908336	NES15947368	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48252295					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908336	NES15947368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90825430 () rs orientation: forward

Symbol	Name	Function Class
D6Mit229	DNA segment, Chr 6, Massachusetts Institute of Technology 229	1872 bp distal
Iqsec1	IQ motif and Sec7 domain 1	Intron