rs48253474 SNP Detail

Summary

• ID
  rs48253474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53376265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTGTGC TAAGAGCGCT
  GGGCTGATAG AAGGAAAATA GGGACTGACA CAAACAGTTG AACTCAGTGG CAACCTTTTC
  CGCTACCCTT GCTGCTAAGC ATAACACAAT GACTAAGTTA TAAAGAAAAA CACCACAGCA
  GTTTTCAGTC TCACACGTAC AGGTGTCAGG GATTTTTTTT TTTTTTTTAA GTTAAAAGTT
  Y
  ACAGATGCAA ATGGAGTTCA CAGCTCACAC CCTTTCTTCA GCCTCTGCAG TGAAAATTTG
  CTATTTTGCT TTTGAACACT TGGTCCCTGT CACCAAAATC AAAGTACACG TATAACTCAT
  AAACATAAAC TTACACTTAA GGATAGCACA CAGATAAAAA TTGACATATA TATATATATG
  TATATATATA TATATATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137751768	ENSMUSSNP6886248	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48253474					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53376265 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	within coordinates
Rr267617	regulatory region 267617	1737 bp proximal