rs48253636 SNP Detail

Summary

• ID
  rs48253636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96141467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACAGTCT CAAGTTTCCA
  GTGAATGGTA ACAAAGACTG TAGAGTGTTG TTGGTACTGC AGTGAGAGGC ATGCTTCCTT
  AGACCAGGTA AGAGAGGCCA GTTTGTTTCT CATAGCCTCG TGAGTTTTTA CTGTGTTTTT
  ATTTGTTAAG CTGCTGCCAG GCTAAATAGA AAAGTAGCCA GGAACATGCT GATTTCAAGA
  Y
  GTCCTTGCTG GTTACAGATA GAAAAACTAC AGAGCATGGG GGGGAAGGTG GGGGGAGGGG
  TAGTTATCCT AGTTTATCCT CAGCTATTTA TATAAATTAA TTACAATGCA GAGATAATTC
  TGGGATTCAG TTTTTTCTAT TTAGGAGTTA AAGAAGCAGT TGAAGACATC AGTCATTTTA
  GAGGTACTTC ATAGTTATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61442854	NES16830266	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48253636					SNP	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442854	NES16830266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96141467 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	180 bp downstream
Tssr86589	transcription start site region 86589	703 bp downstream
Tssr86590	transcription start site region 86590	688 bp downstream
Tssr86591	transcription start site region 86591	629 bp downstream
Tssr86592	transcription start site region 86592	612 bp downstream
Tssr86593	transcription start site region 86593	584 bp downstream
Tssr86594	transcription start site region 86594	401 bp downstream
Tssr86595	transcription start site region 86595	153 bp downstream
Tssr86596	transcription start site region 86596	137 bp downstream