rs48254589 SNP Detail

Summary

• ID
  rs48254589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90017500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCA CGCTCCAGGA GCCGGAGCTA
  Y
  CCTCCGCCCC GCCCCCAGCG TGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325274617	CHEV_16_90220857	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48254589					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90017500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	within coordinates
Rr519072	regulatory region 519072	within coordinates
Rr519073	regulatory region 519073	153 bp proximal
Rr519074	regulatory region 519074	161 bp proximal
Sod1	superoxide dismutase 1, soluble	150 bp upstream
Tssr139276	transcription start site region 139276	926 bp downstream
Tssr139277	transcription start site region 139277	75 bp downstream
Tssr139278	transcription start site region 139278	23 bp downstream
Tssr139279	transcription start site region 139279	2 bp downstream
Tssr139280	transcription start site region 139280	8 bp upstream
Tssr139281	transcription start site region 139281	24 bp upstream
Tssr139282	transcription start site region 139282	96 bp upstream
Tssr139283	transcription start site region 139283	135 bp upstream