rs48254996 SNP Detail

Summary

• ID
  rs48254996
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70688976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA ATCCCATTGC CTCAGTTGGA
  M
  TCTCTGCCTG CAGTACCACA CCCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145122535	ENSMUSSNP4212366	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss322699310	CHEV_8_72760225	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48254996					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70688976 () rs orientation: forward

Symbol	Name	Function Class
Armc6	armadillo repeat containing 6	1877 bp upstream
Cpgi20446	CpG island 20446	1343 bp distal
Rr400897	regulatory region 400897	1671 bp downstream
Sugp2	SURP and G patch domain containing 2	within coordinates
Tssr77718	transcription start site region 77718	1718 bp downstream
Tssr77719	transcription start site region 77719	1698 bp downstream
Tssr77720	transcription start site region 77720	1671 bp downstream
Tssr81602	transcription start site region 81602	1867 bp upstream