rs48255515 SNP Detail

Summary

• ID
  rs48255515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:101438000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACAGAGA TCAGATAATG ACATCATAGA
  TCCTGCCTTC TCCTCCCCCT CAATGTTCTG GGTGTTTCTC AGGGGCCTGC AAAGACTGTT
  TTAGTAAAAT TTGTCAAGTA GAATTGTTTG ATGTACACCC ACAAATCTTA CTCTGCCCTG
  Y
  CTGCTCTTAA AATCTACAGC TTTCATCACT CTCCAGGAGG CAGGGCTGAC TGAGCCTTCC
  AACTTCCTCA TTGGCTCGCT GTCTGAGGGA AGTAGCTATG TTCCTTACAC TTTTGTCTTT
  GGAATATTAC TATATATTTT AATAGCTCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324798523	CHEV_14_101599781	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48255515					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:101438000 () rs orientation: forward

Symbol	Name	Function Class
Prr30	proline rich 30	234 bp upstream
Tssr126900	transcription start site region 126900	1526 bp downstream
Tssr130022	transcription start site region 130022	1645 bp upstream
Tssr130023	transcription start site region 130023	1605 bp upstream
Tssr130024	transcription start site region 130024	1491 bp upstream
Tssr130025	transcription start site region 130025	241 bp upstream
Tssr130026	transcription start site region 130026	146 bp upstream