rs48256594 SNP Detail

Summary

• ID
  rs48256594
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116206868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCTGTA GCCTAGTTTA
  GCCTCAAACA TACAGGAATC CTCCTGCCTC AGACTCACTA GGATTATAGG CATGAGCCAT
  CACCTCCAGC AAACACAAAC ATTTCTTATG GAGGAACCTA TCACCAACCA CAAATGGTTG
  TGGTTACGAA TCAGATGTCA TTTATCCAGC TTGTCAAGGA CTAAACACAG TTCAGCCAGA
  W
  CACTAGAACT TGAAAAATCC CAGCCAACAA GCAACTCTTT GGTGGCCCTG TAAGTATTGG
  GTTATTTTTT TAAAACCGAC TTTTTTCTTC ATTAAATTGA AAAGAGAGCC CAAAAAGCTA
  AACAATAAAT TCCACAATTA AATGTAGAAA GTCCAACTCA AACCATACCT CCAGAGAATT
  TGAGATGAGC TTATCCCACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60437329	NES15944731	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs48256594					SNP	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437329	NES15944731	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116206868 () rs orientation: forward

Symbol	Name	Function Class
Cdc14a	CDC14 cell division cycle 14A	within coordinates
Rr70202	regulatory region 70202	within coordinates
Rr78756	regulatory region 78756	1669 bp distal
Rr78757	regulatory region 78757	784 bp proximal