rs48256964 SNP Detail

Summary

• ID
  rs48256964
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34933125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGTGTC AACCAAAAAA
  AAAAAAAAAA AAAAAAAAAA CCAAGTTGCA AAGGGCAGGA ACTGATCAAA ACAAACAAAC
  AAACAAACAA CACACCCAGA CCCGTAGGAG AAGCAGAAAG AATTGCCTCC CGGACAAGCA
  AATTGTCAAC TTAACCGTAG TGGTCAAGTC GAAATCAGTA TTCTTAAATT TCGGTCTTTT
  S
  CCCAGCTAGA AAGAAGCCCC ACAACCTCTC ATATAAGCCT GAGAGCGGTG GCGCTGACAT
  ATCCCCCCCA CCGCACTGTG CAATATCCTG TGCTGCCTTA TCGAACCAAA AGCCCAAGCG
  TGTTCCACTG TGTGGGTTAA TGAAAGTACG TTCTTTGTCC CTTTTCAGCT TAGGACATTT
  TTTTTTCTAT TACATTTACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60993607	NES16129823	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48256964					SNP	G	G	G	G	G	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993607	NES16129823	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34933125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	859 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1649 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	1070 bp downstream
Rr645337	regulatory region 645337	315 bp distal
Rr645338	regulatory region 645338	55 bp proximal
Rr645339	regulatory region 645339	931 bp proximal
Rr645340	regulatory region 645340	993 bp proximal
Rr645341	regulatory region 645341	1660 bp proximal