rs48257011 SNP Detail

Summary

• ID
  rs48257011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:76022616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT CCACAGCTCC TGAGAGGATG
  Y
  CCTGCACCTC TGATTTGCAC ATTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss52665155	NES15472133	PERLEGEN	MM_PANEL2	f	SNP		T			T	C	C	T
ss144640714	ENSMUSSNP589827	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss324437445	CHEV_13_76011945	CHEVERUD	SCREENING_POP	f	SNP				C					C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs48257011					SNP	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665155	NES15472133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:76022616 () rs orientation: forward

Symbol	Name	Function Class
Rhobtb3	Rho-related BTB domain containing 3	within coordinates
Rr273737	regulatory region 273737	985 bp proximal
Rr277199	regulatory region 277199	584 bp proximal
Rr277200	regulatory region 277200	985 bp proximal
Rr277201	regulatory region 277201	1785 bp proximal