rs48257723 SNP Detail

Summary

• ID
  rs48257723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49674945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT ATCTGGGAGG GAGTGGTTAT
  Y
  TCCTTAGGAA AATAATCATG AAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148123695	ENSMUSSNP5929123	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325174431	CHEV_16_49854695	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48257723					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49674945 () rs orientation: forward

Symbol	Name	Function Class
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	within coordinates
Cpgi8307	CpG island 8307	532 bp proximal
Gm4633	predicted gene 4633	within coordinates
Gm56621	predicted gene, 56621	within coordinates
Gm60685	predicted gene, 60685	1655 bp upstream
Rr370104	regulatory region 370104	1462 bp upstream
Rr516740	regulatory region 516740	1133 bp distal
Rr516741	regulatory region 516741	74 bp distal
Rr516742	regulatory region 516742	294 bp proximal
Rr516743	regulatory region 516743	795 bp proximal
Rr516744	regulatory region 516744	909 bp proximal
Rr516745	regulatory region 516745	1579 bp proximal
Tssr4899	transcription start site region 4899	524 bp upstream
Tssr4900	transcription start site region 4900	678 bp upstream
Tssr4901	transcription start site region 4901	788 bp upstream
Tssr4902	transcription start site region 4902	903 bp upstream
Tssr4903	transcription start site region 4903	1185 bp upstream
Tssr138723	transcription start site region 138723	1405 bp downstream
Tssr138724	transcription start site region 138724	223 bp downstream
Tssr138725	transcription start site region 138725	38 bp downstream
Tssr138726	transcription start site region 138726	507 bp upstream
Tssr138727	transcription start site region 138727	537 bp upstream
Tssr138728	transcription start site region 138728	767 bp upstream
Tssr138729	transcription start site region 138729	1042 bp upstream
Tssr138730	transcription start site region 138730	1163 bp upstream
Tssr138731	transcription start site region 138731	1490 bp upstream
Tssr138732	transcription start site region 138732	1636 bp upstream
Tssr138733	transcription start site region 138733	1724 bp upstream
Tssr138734	transcription start site region 138734	1976 bp upstream
Tssr141348	transcription start site region 141348	715 bp downstream
Tssr141349	transcription start site region 141349	935 bp downstream
Tssr141350	transcription start site region 141350	1250 bp downstream
Tssr141351	transcription start site region 141351	1534 bp downstream
Tssr141352	transcription start site region 141352	1765 bp downstream