rs48257789 SNP Detail

Summary

• ID
  rs48257789
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133391821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCATCC CAGGTCATGT
  CCACACACAA ATGAGGATTT CCGATATCTC CTGAAAACCT GGCAAAAAAC GGACTAGAAT
  AGAATAGCAG CAGCCTCCTT TATGTAGAGT CCTAACCAGT AGACTGTGTT CTGATACATT
  GTGTCTGGAC CTTCTTACAA AGATCAGACT TGTAATTCTC ACCTTAGCTT GCCCCAGGAC
  K
  GCCTGGCCAC TGGAAACCCC TTACATATTT GTTAACAGAG ACGCTAAATA GGATAAATTC
  AGAGCTACTC CAGAGCTACT CTCGCCTTCT GAACTGGCAG ATACTGAGAA AAACTTTGTT
  AATGGTAAGA TCGAGCAAGT CCGCAAGCAC TGTACATTTT CAGAGAAGAC AGATAGTACC
  CCCTCAAAGT ATTAAGTAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147626638	ENSMUSSNP784367	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48257789					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133391821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12316	CpG island 12316	1953 bp proximal
Rr366783	regulatory region 366783	347 bp upstream
Rr565619	regulatory region 565619	297 bp proximal
Rr565620	regulatory region 565620	398 bp proximal
Rr565621	regulatory region 565621	1972 bp proximal