rs48257919 SNP Detail

Summary

• ID
  rs48257919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128552414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGCCTGG GGGGAGACTG GCATCAATTC TAAACATCTA
  TTCATTTAGT GTTAGGGTGT AATTTTATGT TTGGGGGGGA CGGACGGACA ATGTGCTATA
  Y
  ACAGTTAAAT GCAAGCCAAA ACTCGACTGA GGCAGAGGCT ATCAACAGGA GGTGAAGTGG
  TGTGTTTTTA GTTGTTTGTT TTGTTTTTCA AGACTGACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147568450	ENSMUSSNP3424754	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48257919					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128552414 () rs orientation: forward

Symbol	Name	Function Class
D2Mit305	DNA segment, Chr 2, Massachusetts Institute of Technology 305	1251 bp distal
D2Mit305.1	DNA segment, Chr 2, Massachusetts Institute of Technology 305.1	1364 bp distal
Mertk	MER proto-oncogene tyrosine kinase	within coordinates
Rr1768	regulatory region 1768	1681 bp upstream
Tssr20064	transcription start site region 20064	1760 bp downstream
Tssr20065	transcription start site region 20065	1711 bp downstream
Tssr20066	transcription start site region 20066	1429 bp downstream
Tssr20067	transcription start site region 20067	1387 bp downstream